addSequences | Genetic Sequences |
BLAST | Basic Local Alignment Search Tool (BLAST) |
BLAST_help | Basic Local Alignment Search Tool (BLAST) |
box | Boxshade: Shading Multiple Aligned Sequences |
boxshade | Boxshade: Shading Multiple Aligned Sequences |
boxshade_help | Boxshade: Shading Multiple Aligned Sequences |
closeGenDB | Gene Sequence databases |
clustal | Run Multiple Sequence Alignment (clustal) on a Set of Sequences |
clustal_help | Run Multiple Sequence Alignment (clustal) on a Set of Sequences |
createGenDB | Gene Sequence databases |
findAccuracy | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
GenClass16S | Manage GenClass16S objects |
GenClass16S_Greengenes | Manage GenClass16S objects |
GenDB | Gene Sequence databases |
getHierarchy | Classification Hierarchy for Sequences |
getIDs | Classification Hierarchy for Sequences |
getRank | Classification Hierarchy for Sequences |
getSequences | Genetic Sequences |
getTaxonomyNames | Classification Hierarchy for Sequences |
GreengenesMetaDataReader | Manage GenClass16S objects |
kalign | Multiple Sequence Alignment (kalign) |
kalign_help | Multiple Sequence Alignment (kalign) |
listGenDB | Gene Sequence databases |
metaGenDB | Gene Sequence databases |
nSequences | Genetic Sequences |
openGenDB | Gene Sequence databases |
plot | Plot Genetic Sequences and Alignments |
plot.DNAMultipleAlignment | Plot Genetic Sequences and Alignments |
plot.DNAStringSet | Plot Genetic Sequences and Alignments |
plot.RNAMultipleAlignment | Plot Genetic Sequences and Alignments |
plot.RNAStringSet | Plot Genetic Sequences and Alignments |
predict | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
predict.BLAST | Basic Local Alignment Search Tool (BLAST) |
predict.RDPClassifier | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
print.BLAST | Basic Local Alignment Search Tool (BLAST) |
print.GenDB | Gene Sequence databases |
print.RDPClassifier | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
RDP | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
removeRDP | Ribosomal Database Project (RDP) Classifier for 16S rRNA |
reopenGenDB | Gene Sequence databases |
Sequences | Genetic Sequences |
simRank | Compute the SimRank Similarity between Sets of Sequences |
trainRDP | Ribosomal Database Project (RDP) Classifier for 16S rRNA |