

Publications for Dr. Rao Mallik Kotamarti 
 Thesis: Quasi alignment methods for molecular sequence analysis
 R.M. Kotamarti, M. Hahsler, D.W. Raiford, M. McGee and M.H. Dunham. "Analyzing Classification Using Extensible Markov Models," Bioinformatics 26(18):22352241, 2010.
 R.M. Kotamarti, M. Hahsler, D.W. Raiford and M.H. Dunham. "Sequence Transformation to a Complex Signature Form for Consistent Phylogetic Tree Using Extensible Markov Model," Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010.
 R.M. Kotamarti, and M.H. Dunham. Alignmentfree Sequence Analysis with Extensible Markov Model. BIOKDD 2010
 R.M. Kotamarti, D.W. Raiford, M.L. Raymer and M.H. Dunham. "A Data Mining Approach to Predicting Phylum for Microbial Organisms Using GenomeWide Sequence Data," 2009 Ninth IEEE International Conference on Bioinformatics and Bioengineering.
 R.M. Kotamarti, D.W. Raiford, M. Hahsler, and Y. Wang, M. McGee, and M.H. Dunham. "Targeted Genomic signature profiling with
Quasialignment statistics," COBRA preprint series, 2009.
 R.M. Kotamarti, M. Thornton and M. H. Dunham. "Quantum Computing Approach for Alignmentfree
Sequence Search and Classification". A chapter in IGI Global book: Multidisciplinary Computational Intelligence
Techniques: Applications in Business, Engineering and Medicine

